Cytoscape 3.4.0 User ManualΒΆ
The Cytoscape User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.
Copyright (c) 2001-2016 The Cytoscape Consortium
Table of Contents
- 1. Introduction
- 2. Launching Cytoscape
- 3. Command Line Arguments
- 4. Quick Tour of Cytoscape
- 5. Creating Networks
- 6. Nested Networks
- 7. Supported Network File Formats
- 8. Node and Edge Column Data
- 9. Ontology and Annotation Import
- 10. Column Data Functions and Equations
- 11. Finding and Filtering Nodes and Edges
- 12. Navigation and Layout
- 13. Styles
- 14. App Manager
- 15. Command Tool
- 16. Merge
- 17. NetworkAnalyzer
- 18. Cytoscape Preferences
- 19. Linkout
- 20. Panels
- 21. Rendering Engine
- 22. Publish Your Data
- 23. Cytoscape.js and Cytoscape
- 24. Programmatic Access to Cytoscape Features (Scripting)
- 25. Cytoscape Privacy Policy